Philip: very interesting paper with some disturbing results for PISA rankings fans -- many thanks for the reference. (I recall struggling with the PISA Technical Report about 10 years ago ...)
Yes! Intriguing that "draws from an (estimated) distribution of a latent trait" have now morphed into being treated as "imputed values of a missing variable". [It's the conflation of "missing" and "latent"!] But, as I said, the pv suite does appear to do this. I put such reservations aside in my attempts to try and provide a "solution" to the problem in this case which I interpreted as "how to get the data into Stata and recognised as MI?" I guess that that is what the SAS and SPSS code that Vincent cites does as well.
it is interesting/amusing to think about the (implied) rationale for imputing all values of a variable that was completely missing in the first place...

Since I couldn't find a real solution and the analysis was more of an excercise to get myself familiar with the mi command and the process of imputation in Stata in general, I decided to disregard the multilevel structure and the plausible values for now and do some easier analysis. So I only used one plausible value as the dependent variable (which was suiting me just fine, since the final dataset I will be using for my analysis, will not have pausible values as the variable of interest) and just worked on understanding the general way of producing imputations and using the mi command to combine the results.
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